IL_4V67_293

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_293 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.1345

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4V67|1|DA|G|1310
4V67|1|DA|G|1311
4V67|1|DA|U|1312
4V67|1|DA|U|1313
*
4V67|1|DA|A|1603
4V67|1|DA|C|1604

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23