IL_4V67_338

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4V67|1|DA|A|2572, 4V67|1|DA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_338 not in the Motif Atlas

Geometric match to IL_4WF9_096

Geometric discrepancy: 0.1016

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V67|1|DA|C|2512
4V67|1|DA|G|2513
*
4V67|1|DA|C|2571
4V67|1|DA|A|2572
4V67|1|DA|C|2573
4V67|1|DA|G|2574

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CX

Bacterial peptide chain release factor 2 (RF-2)

Chain DE

50S ribosomal protein L3