IL_44609.4

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4	1-4	2-3
1	IL_3IGI_013	3IGI	0.2767	2	Multiple bulged bases	A	Group II catalytic intron D1-D4-3	U	365	A	366	*	U	375	G	378	cWW	cWW
2	IL_9E6Q_098	9E6Q	0.3575	2		1	LSU rRNA	U	2810	U	2811	*	A	2824	G	2827	cWW	cWW
3	IL_4WF9_103	4WF9	0.3762	2	Multiple bulged bases	X	LSU rRNA	U	2722	U	2723	*	A	2738	G	2741	cWW	cWW
4	IL_8B0X_164	8B0X	0.3700	2	Multiple bulged bases (H)	a	LSU rRNA	U	2699	U	2700	*	A	2715	G	2718	cWW	cWW
5	IL_8GLP_163	8GLP	0.4079	2	Multiple bulged bases (H)	L5	LSU rRNA	U	4641	U	4642	*	A	4655	G	4658	cWW	cWW
6	IL_9H3G_132	9H3G	0.3959	2		A	LSU rRNA	U	3061	U	3062	*	A	3075	G	3078	cWW	cWW
7	IL_8OI5_119	8OI5	0.2147	2		1	LSU rRNA	C	3035	U	3036	*	A	3049	G	3052	cWW	cWW
8	IL_9AXU_112	9AXU	0.2155	2		2	LSU rRNA	C	3159	U	3160	*	A	3173	G	3176	cWW	cWW
9	IL_9PN5_115	9PN5	0.1901	2		A1	LSU rRNA	C	3063	U	3064	*	A	3077	G	3080	cWW	cWW
10	IL_7A0S_097	7A0S	0.1707	3	Multiple bulged bases	X	LSU rRNA	C	2674	U	2675	*	A	2690	G	2694	cWW	cWW
11	IL_9DFE_105	9DFE	0.1372	3		1A	LSU rRNA	C	2695	U	2696	*	A	2711	G	2714	cWW	cWW
12	IL_9PN5_104	9PN5	0.1394	2		A1	LSU rRNA	C	2881	U	2882	*	A	2940	G	2943	cWW	cWW
13	IL_9H3G_123	9H3G	0.1382	2		A	LSU rRNA	C	2880	U	2881	*	A	2939	G	2942	cWW	cWW
14	IL_8GLP_148	8GLP	0.0980	2		L5	LSU rRNA	C	4458	U	4459	*	A	4517	G	4520	cWW	cWW
15	IL_9AXU_100	9AXU	0.1079	2		2	LSU rRNA	C	2976	U	2977	*	A	3035	G	3038	cWW	cWW
16	IL_9E6Q_090	9E6Q	0.0496	2	Multiple bulged bases (H)	1	LSU rRNA	C	2626	U	2627	*	A	2685	G	2688	cWW	cWW
17	IL_4V9F_088	4V9F	0.0000	2	Multiple bulged bases	0	LSU rRNA	C	2547	C	2548	*	G	2606	G	2609	cWW	cWW
18	IL_9DFE_098	9DFE	0.2937	2		1A	LSU rRNA	C	2512	G	2513	*	C	2571	G	2574	cWW	cWW
19	IL_7A0S_090	7A0S	0.3195	2	Multiple bulged bases	X	LSU rRNA	C	2491	G	2492	*	C	2550	G	2553	cWW	cWW
20	IL_4WF9_096	4WF9	0.3866	2	Multiple bulged bases (H)	X	LSU rRNA	C	2539	A	2540	*	U	2598	G	2601	cWW	cWW
21	IL_8B0X_156	8B0X	0.4483	2		a	LSU rRNA	C	2516	A	2517	*	U	2575	G	2578	cWW	cWW
22	IL_8GLP_038	8GLP	0.5501	3		L5	LSU rRNA	C	737	G	740	*	C	924	G	926	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CU*AACG	6
UU*ACUG	2
CG*CACG	2
CA*UACG	2
UA*UACG	1
UU*AUAG	1
UU*AAUG	1
UU*AGUG	1
CU*AAUG	1
CU*AUUG	1
CU*ACAUG	1
CU*AUAAG	1
CC*GUCG	1
CCGG*CCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AC	11
*CU	2
*AU	2
*UA	1
*GU	1
*UU	1
*CAU	1
*UAA	1
*UC	1
CG*C	1

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_44609.4 Version IL_44609.4 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_44609.4 Version IL_44609.4 of this group appears in releases 4.10 to 4.10

Download

Csv

Json