IL_4V68_002

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

4V68|1|AA|A|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_002 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.099

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

4V68|1|AA|G|44
4V68|1|AA|U|45
*
4V68|1|AA|G|396
4V68|1|AA|A|397
4V68|1|AA|C|398

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AZ

Elongation factor Tu-A