IL_4V68_017

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1237

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V68|1|AA|G|409
4V68|1|AA|G|410
4V68|1|AA|A|411
4V68|1|AA|A|412
4V68|1|AA|G|413
4V68|1|AA|A|414
4V68|1|AA|A|415
4V68|1|AA|G|416
*
4V68|1|AA|U|427
4V68|1|AA|G|428
4V68|1|AA|U|429
4V68|1|AA|A|430
4V68|1|AA|A|431
4V68|1|AA|A|432
4V68|1|AA|C|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4