IL_4V68_019

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_019 not in the Motif Atlas

Geometric match to IL_6CZR_131

Geometric discrepancy: 0.1737

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V68|1|AA|G|450
4V68|1|AA|A|451
4V68|1|AA|A|452
4V68|1|AA|A|453
4V68|1|AA|C|454
4V68|1|AA|C|455
4V68|1|AA|C|456
*
4V68|1|AA|G|475
4V68|1|AA|G|476
4V68|1|AA|A|477
4V68|1|AA|C|479
4V68|1|AA|U|480
4V68|1|AA|G|481
4V68|1|AA|A|482
4V68|1|AA|C|483

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16