IL_4V68_036

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

4V68|1|AA|G|926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_036 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.2322

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4V68|1|AA|G|925
4V68|1|AA|G|926
4V68|1|AA|G|927
*
4V68|1|AA|U|1390
4V68|1|AA|U|1391

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AX

SYNTHETIC MRNA