IL_4V68_052

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V68|1|AA|C|1400, 4V68|1|AA|A|1503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_052 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1104

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V68|1|AA|C|1399
4V68|1|AA|C|1400
4V68|1|AA|G|1401
*
4V68|1|AA|C|1501
4V68|1|AA|A|1502
4V68|1|AA|A|1503
4V68|1|AA|G|1504

Current chains

Chain AA

16S rRNA

Nearby chains

Chain A0

MRNA CODON

Chain AV

Transfer RNA; tRNA

Chain AX

SYNTHETIC MRNA