IL_4V68_057

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_057 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0984

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V68|1|AA|G|1416
4V68|1|AA|G|1417
4V68|1|AA|A|1418
4V68|1|AA|G|1419
*
4V68|1|AA|U|1481
4V68|1|AA|G|1482
4V68|1|AA|A|1483
4V68|1|AA|C|1484

Current chains

Chain AA

16S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA