IL_4V68_064

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4V68|1|BA|G|100

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_064 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.0877

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

4V68|1|BA|G|81
4V68|1|BA|G|82
4V68|1|BA|G|83
4V68|1|BA|A|84
4V68|1|BA|G|85
*
4V68|1|BA|C|97
4V68|1|BA|G|98
4V68|1|BA|U|99
4V68|1|BA|G|100
4V68|1|BA|G|102
4V68|1|BA|A|103
4V68|1|BA|U|104
4V68|1|BA|C|105

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L29

Chain BY

50S ribosomal protein L24