IL_4V68_067

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_067 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0689

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V68|1|BA|U|239
4V68|1|BA|G|240
4V68|1|BA|A|241
4V68|1|BA|G|242
4V68|1|BA|U|243
4V68|1|BA|A|244
4V68|1|BA|G|245
*
4V68|1|BA|C|253
4V68|1|BA|G|254
4V68|1|BA|A|255
4V68|1|BA|A|256
4V68|1|BA|A|257
4V68|1|BA|G|258

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15