IL_4V68_085

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_085 not in the Motif Atlas

Homologous match to IL_7RQB_026

Geometric discrepancy: 0.1426

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V68|1|BA|C|846
4V68|1|BA|U|847
4V68|1|BA|G|848
4V68|1|BA|A|849
4V68|1|BA|C|850
*
4V68|1|BA|G|927
4V68|1|BA|G|928
4V68|1|BA|U|930
4V68|1|BA|G|931

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L30