IL_4V68_125

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4V68|1|BA|G|1801, 4V68|1|BA|G|1816, 4V68|1|BA|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_125 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0526

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V68|1|BA|U|1798
4V68|1|BA|G|1799
4V68|1|BA|C|1800
4V68|1|BA|G|1801
4V68|1|BA|A|1802
4V68|1|BA|A|1803
4V68|1|BA|C|1804
*
4V68|1|BA|G|1813
4V68|1|BA|G|1814
4V68|1|BA|A|1815
4V68|1|BA|G|1816
4V68|1|BA|G|1817
4V68|1|BA|U|1818
4V68|1|BA|A|1819
4V68|1|BA|U|1820
4V68|1|BA|A|1821

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2