IL_4V68_129

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_129 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2106

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V68|1|BA|U|1851
4V68|1|BA|C|1852
4V68|1|BA|A|1853
4V68|1|BA|A|1854
4V68|1|BA|G|1855
*
4V68|1|BA|C|1887
4V68|1|BA|G|1888
4V68|1|BA|A|1889
4V68|1|BA|A|1890
4V68|1|BA|G|1891

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2