IL_4V68_134

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4V68|1|BA|C|2055, 4V68|1|BA|C|2612, 4V68|1|BA|U|2613

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_134 not in the Motif Atlas

Homologous match to IL_7A0S_074

Geometric discrepancy: 0.0982

The information below is about IL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V68|1|BA|A|2054
4V68|1|BA|C|2055
4V68|1|BA|G|2056
4V68|1|BA|A|2057
*
4V68|1|BA|U|2611
4V68|1|BA|C|2612
4V68|1|BA|U|2613
4V68|1|BA|A|2614
4V68|1|BA|U|2615

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BW

50S ribosomal protein L22