IL_4V68_149

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4V68|1|BA|U|2491

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_149 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1224

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4V68|1|BA|A|2459
4V68|1|BA|U|2460
4V68|1|BA|C|2461
*
4V68|1|BA|G|2489
4V68|1|BA|G|2490
4V68|1|BA|U|2491
4V68|1|BA|U|2492
4V68|1|BA|U|2493

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BQ

50S ribosomal protein L16