IL_4V68_150

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_150 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.2125

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V68|1|BA|C|2466
4V68|1|BA|C|2467
4V68|1|BA|G|2468
4V68|1|BA|A|2469
4V68|1|BA|G|2470
*
4V68|1|BA|C|2480
4V68|1|BA|G|2481
4V68|1|BA|G|2482
4V68|1|BA|C|2483
4V68|1|BA|G|2484

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BQ

50S ribosomal protein L16