IL_4V68_152

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4V68|1|BA|G|2576, 4V68|1|BA|A|2577

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_152 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0761

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4V68|1|BA|C|2510
4V68|1|BA|U|2511
4V68|1|BA|C|2512
*
4V68|1|BA|G|2574
4V68|1|BA|C|2575
4V68|1|BA|G|2576
4V68|1|BA|A|2577
4V68|1|BA|G|2578

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3