IL_4V68_160

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

4V68|1|BA|A|2713

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_160 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.1272

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

4V68|1|BA|C|2695
4V68|1|BA|U|2696
*
4V68|1|BA|A|2711
4V68|1|BA|U|2712
4V68|1|BA|A|2712|||A
4V68|1|BA|A|2713
4V68|1|BA|G|2714

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19