IL_4V68_172

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_172 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3259

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V68|1|AA|C|656
4V68|1|AA|G|657
4V68|1|AA|G|658
*
4V68|1|AA|C|747
4V68|1|AA|C|748
4V68|1|AA|C|749
4V68|1|AA|G|750

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AO

30S ribosomal protein S15