IL_4V68_175

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CCG*CUGG

Length

7 nucleotides

Bulged bases

4V68|1|AA|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_175 not in the Motif Atlas

Homologous match to IL_4LFB_047

Geometric discrepancy: 0.4667

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V68|1|AA|C|1059
4V68|1|AA|C|1060
4V68|1|AA|G|1061
*
4V68|1|AA|C|1195
4V68|1|AA|U|1196
4V68|1|AA|G|1197
4V68|1|AA|G|1198

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AE

30S ribosomal protein S5

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14

Chain AY

Transfer RNA; tRNA