IL_4V68_178

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GCCAC*GGAGC

Length

10 nucleotides

Bulged bases

4V68|1|AA|C|1260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_178 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.4457

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V68|1|AA|G|1258
4V68|1|AA|C|1259
4V68|1|AA|C|1260
4V68|1|AA|A|1261
4V68|1|AA|C|1262
*
4V68|1|AA|G|1273
4V68|1|AA|G|1274
4V68|1|AA|A|1275
4V68|1|AA|G|1276
4V68|1|AA|C|1277

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AN

30S ribosomal protein S14

Chain AU

30S ribosomal protein Thx