IL_4V69_020

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2187

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V69|1|AA|U|409
4V69|1|AA|G|410
4V69|1|AA|A|411
4V69|1|AA|A|412
4V69|1|AA|G|413
4V69|1|AA|A|414
4V69|1|AA|A|415
4V69|1|AA|G|416
*
4V69|1|AA|U|427
4V69|1|AA|G|428
4V69|1|AA|U|429
4V69|1|AA|A|430
4V69|1|AA|A|431
4V69|1|AA|A|432
4V69|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4