IL_4V69_061

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_061 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1984

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V69|1|AA|G|1405
4V69|1|AA|U|1406
4V69|1|AA|C|1407
*
4V69|1|AA|G|1494
4V69|1|AA|U|1495
4V69|1|AA|C|1496

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AX

mRNA

Chain AY

A/T-site tRNA Phe

Chain BB

Large subunit ribosomal RNA; LSU rRNA