IL_4V69_078

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_078 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.104

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V69|1|BB|G|188
4V69|1|BB|G|189
4V69|1|BB|A|190
4V69|1|BB|A|191
4V69|1|BB|C|192
4V69|1|BB|U|193
4V69|1|BB|G|194
*
4V69|1|BB|C|201
4V69|1|BB|U|202
4V69|1|BB|A|203
4V69|1|BB|A|204
4V69|1|BB|G|205
4V69|1|BB|U|206
4V69|1|BB|A|207
4V69|1|BB|C|208

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28