IL_4V69_083

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V69|1|BB|A|504, 4V69|1|BB|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_083 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.1289

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V69|1|BB|G|481
4V69|1|BB|A|482
4V69|1|BB|A|483
4V69|1|BB|C|484
*
4V69|1|BB|G|496
4V69|1|BB|A|497
4V69|1|BB|G|498
4V69|1|BB|U|499
4V69|1|BB|G|500
4V69|1|BB|A|501
4V69|1|BB|A|502
4V69|1|BB|A|503
4V69|1|BB|A|504
4V69|1|BB|A|505
4V69|1|BB|G|506
4V69|1|BB|A|507
4V69|1|BB|A|508
4V69|1|BB|C|509

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24