3D structure

PDB id
4V69 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ternary complex-bound E.coli 70S ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
6.7 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V69_118 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.1225
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4V69|1|BB|A|1262
4V69|1|BB|U|1263
4V69|1|BB|A|1264
4V69|1|BB|A|1265
4V69|1|BB|G|1266
4V69|1|BB|U|1267
4V69|1|BB|A|1268
4V69|1|BB|A|1269
*
4V69|1|BB|U|2011
4V69|1|BB|G|2012
4V69|1|BB|A|2013
4V69|1|BB|A|2014
4V69|1|BB|A|2015
4V69|1|BB|U|2016
4V69|1|BB|U|2017

Current chains

Chain BB
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BE
50S ribosomal protein L4
Chain BN
50S ribosomal protein L17
Chain BQ
50S ribosomal protein L20
Chain BS
50S ribosomal protein L22

Coloring options:


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