IL_4V69_169

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V69|1|BB|A|2542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_169 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1205

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

4V69|1|BB|U|2522
4V69|1|BB|G|2523
*
4V69|1|BB|C|2540
4V69|1|BB|A|2541
4V69|1|BB|A|2542
4V69|1|BB|G|2543

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BJ

50S ribosomal protein L13