IL_4V6A_133

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

4V6A|1|BA|G|2116, 4V6A|1|BA|A|2117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6A_133 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.3331

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V6A|1|BA|C|2108
4V6A|1|BA|U|2109
4V6A|1|BA|G|2110
4V6A|1|BA|C|2111
4V6A|1|BA|G|2112
4V6A|1|BA|U|2113
4V6A|1|BA|A|2114
4V6A|1|BA|G|2115
4V6A|1|BA|G|2116
4V6A|1|BA|A|2117
4V6A|1|BA|U|2118
4V6A|1|BA|A|2119
4V6A|1|BA|G|2120
*
4V6A|1|BA|C|2178
4V6A|1|BA|C|2179
4V6A|1|BA|U|2180
4V6A|1|BA|G|2181

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L1