IL_4V6A_213

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6A_213 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2642

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V6A|1|CA|C|1407
4V6A|1|CA|A|1408
4V6A|1|CA|C|1409
*
4V6A|1|CA|G|1491
4V6A|1|CA|A|1492
4V6A|1|CA|A|1493
4V6A|1|CA|G|1494

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CX

RNA (5'-R(P*AP*AP*AP*UP*G)-3')

Chain DA

Large subunit ribosomal RNA; LSU rRNA