IL_4V6A_249

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

4V6A|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6A_249 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.3329

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V6A|1|DA|G|879
4V6A|1|DA|G|880
4V6A|1|DA|G|881
*
4V6A|1|DA|U|895
4V6A|1|DA|A|896
4V6A|1|DA|C|897
4V6A|1|DA|C|898

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DZ

50S ribosomal protein L25