IL_4V6A_254

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCU*AGC

Length

7 nucleotides

Bulged bases

4V6A|1|DA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6A_254 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.249

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6A|1|DA|G|1011
4V6A|1|DA|U|1012
4V6A|1|DA|C|1013
4V6A|1|DA|U|1014
*
4V6A|1|DA|A|1148
4V6A|1|DA|G|1149
4V6A|1|DA|C|1150

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DN

50S ribosomal protein L13

Chain DU

50S ribosomal protein L20