IL_4V6A_370

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAGGC*GCUGGAG

Length

17 nucleotides

Bulged bases

4V6A|1|DA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6A_370 not in the Motif Atlas

Geometric match to IL_8P9A_422

Geometric discrepancy: 0.3627

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6A|1|DA|C|1208
4V6A|1|DA|G|1209
4V6A|1|DA|A|1210
4V6A|1|DA|U|1211
4V6A|1|DA|G|1212
4V6A|1|DA|A|1213
4V6A|1|DA|A|1214
4V6A|1|DA|G|1215
4V6A|1|DA|G|1216
4V6A|1|DA|C|1217
*
4V6A|1|DA|G|1232
4V6A|1|DA|C|1233
4V6A|1|DA|U|1234
4V6A|1|DA|G|1235
4V6A|1|DA|G|1236
4V6A|1|DA|A|1237
4V6A|1|DA|G|1238

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20