IL_4V6C_077

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6C_077 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.0889

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4V6C|1|BA|U|293
4V6C|1|BA|A|294
4V6C|1|BA|G|295
*
4V6C|1|BA|C|343
4V6C|1|BA|A|344
4V6C|1|BA|A|345
4V6C|1|BA|A|346
4V6C|1|BA|A|347

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

50S ribosomal protein L24