IL_4V6C_288

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V6C|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6C_288 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.238

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V6C|1|DA|C|1043
4V6C|1|DA|C|1044
4V6C|1|DA|C|1045
4V6C|1|DA|A|1046
4V6C|1|DA|G|1047
4V6C|1|DA|A|1048
4V6C|1|DA|C|1049
4V6C|1|DA|A|1050
4V6C|1|DA|G|1051
*
4V6C|1|DA|U|1108
4V6C|1|DA|C|1109
4V6C|1|DA|G|1110
4V6C|1|DA|A|1111
4V6C|1|DA|G|1112

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6