IL_4V6D_013

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_013 not in the Motif Atlas

Geometric match to IL_3RW6_003

Geometric discrepancy: 0.274

The information below is about IL_3RW6_003

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V6D|1|AA|G|203
4V6D|1|AA|G|204
4V6D|1|AA|A|205
4V6D|1|AA|C|206
*
4V6D|1|AA|G|213
4V6D|1|AA|C|214

Current chains

Chain AA

16S rRNA

Nearby chains