IL_4V6D_083

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6D|1|BA|G|801, 4V6D|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_083 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1061

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6D|1|BA|G|674
4V6D|1|BA|A|675
4V6D|1|BA|A|676
4V6D|1|BA|A|677
4V6D|1|BA|C|678
*
4V6D|1|BA|G|799
4V6D|1|BA|A|800
4V6D|1|BA|G|801
4V6D|1|BA|A|802
4V6D|1|BA|U|803
4V6D|1|BA|A|804
4V6D|1|BA|G|805
4V6D|1|BA|C|806

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15