IL_4V6D_104

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4V6D|1|BA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_104 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.2941

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V6D|1|BA|U|1018
4V6D|1|BA|U|1019
4V6D|1|BA|A|1020
4V6D|1|BA|A|1021
4V6D|1|BA|G|1022
4V6D|1|BA|U|1023
4V6D|1|BA|G|1024
*
4V6D|1|BA|C|1140
4V6D|1|BA|U|1141
4V6D|1|BA|A|1142
4V6D|1|BA|A|1143
4V6D|1|BA|A|1144

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BJ

50S ribosomal protein L13