IL_4V6D_124

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_124 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.192

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V6D|1|BA|U|1474
4V6D|1|BA|G|1475
4V6D|1|BA|U|1476
4V6D|1|BA|A|1477
4V6D|1|BA|G|1478
*
4V6D|1|BA|U|1513
4V6D|1|BA|G|1514
4V6D|1|BA|A|1515
4V6D|1|BA|G|1516
4V6D|1|BA|G|1517

Current chains

Chain BA

23S rRNA

Nearby chains