IL_4V6D_142

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_142 not in the Motif Atlas

Geometric match to IL_5J7L_318

Geometric discrepancy: 0.0996

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

4V6D|1|BA|G|1933
4V6D|1|BA|C|1934
*
4V6D|1|BA|G|1964
4V6D|1|BA|C|1965
4V6D|1|BA|A|1966
4V6D|1|BA|C|1967

Current chains

Chain BA

23S rRNA

Nearby chains