IL_4V6D_163

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V6D|1|BA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_163 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.0916

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V6D|1|BA|U|2522
4V6D|1|BA|G|2523
*
4V6D|1|BA|C|2540
4V6D|1|BA|A|2541
4V6D|1|BA|A|2542
4V6D|1|BA|G|2543

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BJ

50S ribosomal protein L13