IL_4V6D_193

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V6D|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_193 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1577

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V6D|1|CA|G|147
4V6D|1|CA|G|148
4V6D|1|CA|A|149
4V6D|1|CA|U|150
4V6D|1|CA|A|151
4V6D|1|CA|A|152
4V6D|1|CA|C|153
*
4V6D|1|CA|G|168
4V6D|1|CA|C|169
4V6D|1|CA|U|170
4V6D|1|CA|A|171
4V6D|1|CA|A|172
4V6D|1|CA|U|173
4V6D|1|CA|A|174
4V6D|1|CA|C|175

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20