IL_4V6D_195

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V6D|1|CA|U|244, 4V6D|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_195 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0993

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V6D|1|CA|G|242
4V6D|1|CA|A|243
4V6D|1|CA|U|244
4V6D|1|CA|U|245
4V6D|1|CA|A|246
4V6D|1|CA|G|247
*
4V6D|1|CA|C|277
4V6D|1|CA|G|278
4V6D|1|CA|A|279
4V6D|1|CA|C|280
4V6D|1|CA|G|281
4V6D|1|CA|A|282
4V6D|1|CA|U|283
4V6D|1|CA|C|284

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17