IL_4V6D_204

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_204 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.5277

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6D|1|CA|G|450
4V6D|1|CA|A|451
4V6D|1|CA|A|452
4V6D|1|CA|G|453
4V6D|1|CA|G|454
4V6D|1|CA|G|455
*
4V6D|1|CA|C|477
4V6D|1|CA|A|478
4V6D|1|CA|U|479
4V6D|1|CA|U|480
4V6D|1|CA|G|481
4V6D|1|CA|A|482
4V6D|1|CA|C|483

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16