IL_4V6D_215

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

4V6D|1|CA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_215 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.111

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6D|1|CA|U|662
4V6D|1|CA|A|663
4V6D|1|CA|G|664
4V6D|1|CA|A|665
4V6D|1|CA|G|666
*
4V6D|1|CA|U|740
4V6D|1|CA|G|741
4V6D|1|CA|G|742
4V6D|1|CA|A|743

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CF

30S ribosomal protein S6

Chain CO

30S ribosomal protein S15

Chain CR

30S ribosomal protein S18