3D structure

PDB id
4V6D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.81 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6D_232 not in the Motif Atlas
Homologous match to IL_5J7L_051
Geometric discrepancy: 0.1543
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

4V6D|1|CA|G|1124
4V6D|1|CA|U|1125
4V6D|1|CA|U|1126
4V6D|1|CA|G|1127
4V6D|1|CA|C|1128
*
4V6D|1|CA|G|1144
4V6D|1|CA|A|1145
4V6D|1|CA|A|1146
4V6D|1|CA|C|1147
4V6D|1|CA|U|1148
4V6D|1|CA|C|1149

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CI
30S ribosomal protein S9
Chain CJ
30S ribosomal protein S10

Coloring options:


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