IL_4V6D_271

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

AUC*GAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_271 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2042

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V6D|1|DA|A|849
4V6D|1|DA|U|850
4V6D|1|DA|C|851
*
4V6D|1|DA|G|926
4V6D|1|DA|A|927
4V6D|1|DA|A|928
4V6D|1|DA|U|929

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DZ

50S ribosomal protein L30