IL_4V6D_292

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

4V6D|1|DA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_292 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1715

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V6D|1|DA|C|1319
4V6D|1|DA|C|1320
4V6D|1|DA|A|1321
4V6D|1|DA|A|1322
4V6D|1|DA|C|1323
*
4V6D|1|DA|G|1331
4V6D|1|DA|G|1332
4V6D|1|DA|G|1333

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DT

50S ribosomal protein L23