IL_4V6D_297

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

4V6D|1|DA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_297 not in the Motif Atlas

Geometric match to IL_6CF2_001

Geometric discrepancy: 0.3969

The information below is about IL_6CF2_001

Detailed Annotation

Non canonical cWW and near pair

Broad Annotation

Non canonical cWW and near pair

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V6D|1|DA|G|1432
4V6D|1|DA|A|1433
4V6D|1|DA|A|1434
4V6D|1|DA|G|1435
*
4V6D|1|DA|C|1557
4V6D|1|DA|C|1558
4V6D|1|DA|U|1559
4V6D|1|DA|G|1560
4V6D|1|DA|C|1561

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2