Motif IL_60418.1 Version IL_60418.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 4-5 | 6-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CF2_001 | 6CF2 | 0.3044 | 1 | Non canonical cWW and near pair | G | RNA (35-MER) | G | 5 | G | 6 | A | 7 | C | 8 | * | G | 27 | A | 28 | A | 30 | C | 31 | cWW | cWW | cWW | |||
| 2 | IL_4PMI_008 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | ntWW | cWW | tWW | cWW | |
| 3 | IL_8B0X_115 | 8B0X | 0.2451 | 1 | Tandem non-canonical cWW pairs (H) | a | LSU rRNA | G | 1434 | A | 1435 | A | 1436 | G | 1437 | * | C | 1559 | C | 1560 | G | 1562 | C | 1563 | cWW | cWW | ntWW | cWW | ||
| 4 | IL_23JY_002 | 23JY | 0.6477 | 0 | B+A | RNA (22-mer) | G | 6 | A | 7 | U | 8 | A | 9 | * | U | 16 | U | 17 | G | 18 | C | 19 | cWW | cWW | cWW | cSH | |||
| 5 | IL_23JY_001 | 23JY | 0.6533 | 0 | A+B | RNA (22-mer) | G | 6 | A | 7 | U | 8 | A | 9 | * | U | 16 | U | 17 | G | 18 | C | 19 | cWW | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUA*UUGC | 2 |
| GGAC*GAAAC | 1 |
| GGGC*GGUAC | 1 |
| GAAG*CCUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*UG | 2 |
| GA*AAA | 1 |
| GG*GUA | 1 |
| AA*CUG | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- tWW and non-canonical cWW (1)
- Non canonical cWW and near pair (1)
- Tandem non-canonical cWW pairs (H) (1)
- Basepair signature
- cWW-cWW-L-R-cWW
- Heat map statistics
- Min 0.07 | Avg 0.42 | Max 0.71
Coloring options: